Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbonate dehydratase | RT97_05080 | Not Available | Positive | 1097403 - 1098071 | 24370.9 |
| photosystem reaction center subunit h | RT97_05085 | Not Available | Positive | 1098215 - 1098553 | 12345.3 |
| hypothetical protein | RT97_05090 | Not Available | Positive | 1098821 - 1099057 | 8451.29 |
| dehydrogenase | RT97_05095 | Not Available | Negative | 1099585 - 1100457 | 30852.8 |
| hypothetical protein | RT97_05100 | Not Available | Negative | 1100516 - 1100749 | 7984.97 |
| calpastatin | RT97_05105 | Not Available | Positive | 1101791 - 1102258 | 17619.2 |
| abc transporter substrate-binding protein | RT97_05120 | Not Available | Negative | 1104452 - 1105465 | 34844.1 |
| mfs transporter | RT97_05125 | Not Available | Negative | 1105462 - 1106433 | 33890.0 |
| laci family transcriptional regulator | RT97_05130 | Not Available | Negative | 1106491 - 1107552 | 38800.6 |
| 3-oxoacyl-acp reductase | RT97_05135 | Not Available | Negative | 1107549 - 1108316 | 26464.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
