Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter permease | RT97_00400 | Not Available | Positive | 79675 - 80724 | 38877.6 |
| microcin abc transporter atp-binding protein | RT97_00405 | Not Available | Positive | 80730 - 82361 | 58602.3 |
| mfs transporter | RT97_00410 | Not Available | Positive | 82381 - 83577 | 40754.6 |
| ribosome maturation protein rimp | RT97_00415 | Not Available | Positive | 83773 - 84420 | 23235.7 |
| transcription elongation factor nusa | RT97_00420 | Not Available | Positive | 84437 - 85930 | 55126.6 |
| translation initiation factor if-2 | RT97_00425 | Not Available | Positive | 85955 - 88927 | 105343.0 |
| ribosome-binding factor a | RT97_00430 | Not Available | Positive | 89044 - 89415 | 13721.5 |
| trna pseudouridine synthase b | RT97_00435 | Not Available | Positive | 89418 - 90386 | 34434.3 |
| gtp-binding protein | RT97_00440 | Not Available | Positive | 90383 - 92221 | 67324.9 |
| permease | RT97_00445 | Not Available | Positive | 92288 - 93208 | 32098.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
