Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | RT97_04320 | Not Available | Positive | 924608 - 925606 | 34271.9 |
| abc transporter substrate-binding protein | RT97_04325 | Not Available | Positive | 925744 - 926706 | 34503.5 |
| oxidoreductase | RT97_04330 | Not Available | Positive | 926852 - 928018 | 41844.6 |
| pa-phosphatase | RT97_04335 | Not Available | Positive | 928053 - 928766 | 26076.3 |
| hypothetical protein | RT97_04340 | Not Available | Positive | 928844 - 929365 | 18354.4 |
| rna procession exonuclease-like protein | RT97_04345 | Not Available | Positive | 929446 - 930564 | 40003.0 |
| atp-dependent dna ligase | RT97_04350 | Not Available | Positive | 930561 - 932240 | 62237.0 |
| dead/deah box helicase | RT97_04355 | Not Available | Positive | 932237 - 934987 | 100348.0 |
| thioredoxin | RT97_04360 | Not Available | Negative | 934993 - 935439 | 16057.3 |
| dead/deah box helicase | RT97_04365 | Not Available | Positive | 935517 - 936200 | 24646.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
