Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| preprotein translocase subunit secd | RT97_03600 | Not Available | Positive | 783281 - 785164 | 67805.4 |
| preprotein translocase subunit secf | RT97_03605 | Not Available | Positive | 785177 - 786130 | 35001.9 |
| hypothetical protein | RT97_03610 | Not Available | Positive | 786290 - 788707 | 87468.8 |
| protein smg | RT97_03615 | Not Available | Negative | 788828 - 789346 | 19082.6 |
| dna processing protein dpra | RT97_03620 | Not Available | Negative | 789381 - 790532 | 39559.3 |
| peptidoglycan-binding protein | RT97_03625 | Not Available | Negative | 790570 - 791787 | 44323.1 |
| peptide deformylase | RT97_03630 | Not Available | Positive | 791948 - 792466 | 19375.6 |
| membrane protein | RT97_03635 | Not Available | Positive | 792472 - 792969 | 18511.9 |
| methionyl-trna formyltransferase | RT97_03640 | Not Available | Positive | 792966 - 793919 | 33434.2 |
| branched-chain amino acid abc transporter permease | RT97_03645 | Not Available | Positive | 793919 - 794659 | 26644.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
