Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_00300 | Not Available | Negative | 62534 - 62857 | 12233.6 |
| hypothetical protein | RT97_00305 | Not Available | Positive | 63019 - 63246 | 7968.81 |
| aspartate aminotransferase | RT97_00310 | Not Available | Negative | 63251 - 64438 | 42387.3 |
| transcriptional regulator | RT97_00315 | Not Available | Positive | 64577 - 64837 | 9255.24 |
| toxin hipa | RT97_00320 | Not Available | Positive | 64847 - 66199 | 49886.3 |
| endonuclease iii | RT97_00325 | Not Available | Positive | 66196 - 66843 | 23925.3 |
| lysozyme inhibitor | RT97_00330 | Not Available | Positive | 66854 - 67702 | 30355.1 |
| hypothetical protein | RT97_00335 | Not Available | Positive | 67824 - 68738 | 32760.2 |
| phosphoglycerate kinase | RT97_00340 | Not Available | Negative | 68739 - 69302 | 19992.7 |
| cobalamin synthase | RT97_00345 | Not Available | Negative | 69299 - 70093 | 26889.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
