Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3',5'-cyclic-nucleotide phosphodiesterase | RT97_03250 | Not Available | Positive | 696550 - 697353 | 29140.0 |
| pilin | RT97_03255 | Not Available | Positive | 697558 - 698025 | 15714.9 |
| hypothetical protein | RT97_03260 | Not Available | Positive | 698909 - 699388 | 16662.2 |
| pilus assembly protein pilv | RT97_03265 | Not Available | Positive | 699421 - 699960 | 18802.9 |
| pilus assembly protein pilw | RT97_03270 | Not Available | Positive | 700001 - 700825 | 29060.3 |
| pilus assembly protein pilx | RT97_03275 | Not Available | Positive | 700822 - 701394 | 20100.3 |
| fimbrial assembly protein | RT97_03280 | Not Available | Positive | 701449 - 706407 | 176344.0 |
| pilus assembly protein pile | RT97_03285 | Not Available | Positive | 706383 - 706856 | 16661.8 |
| polymerase | RT97_03290 | Not Available | Positive | 706923 - 708611 | 60695.3 |
| molybdenum cofactor biosynthesis protein moac | RT97_03295 | Not Available | Negative | 708633 - 709115 | 16468.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
