Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydroxy-acid dehydratase | RT97_31870 | Not Available | Negative | 6885290 - 6887059 | 63864.7 |
| nad-dependent epimerase | RT97_31875 | Not Available | Negative | 6887140 - 6888156 | 35577.8 |
| sugar abc transporter atp-binding protein | RT97_31885 | Not Available | Positive | 6889162 - 6890235 | 38841.1 |
| abc transporter substrate-binding protein | RT97_31890 | Not Available | Positive | 6890278 - 6891606 | 48374.4 |
| abc transporter permease | RT97_31895 | Not Available | Positive | 6891644 - 6892552 | 33651.6 |
| sugar abc transporter permease | RT97_31900 | Not Available | Positive | 6892629 - 6893504 | 32475.1 |
| metal-dependent hydrolase | RT97_31905 | Not Available | Negative | 6893624 - 6894598 | 36297.9 |
| acyl-phosphate glycerol 3-phosphate acyltransferase | RT97_31910 | Not Available | Negative | 6894618 - 6895352 | 27505.4 |
| histidinol phosphate phosphatase | RT97_31915 | Not Available | Negative | 6895352 - 6895930 | 20517.9 |
| hypothetical protein | RT97_31925 | Not Available | Negative | 6896292 - 6896567 | 10258.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
