Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter permease | RT97_31420 | Not Available | Positive | 6792471 - 6793349 | 30853.6 |
| abc transporter | RT97_31425 | Not Available | Positive | 6793356 - 6794345 | 35498.6 |
| peptide abc transporter atp-binding protein | RT97_31430 | Not Available | Positive | 6794342 - 6795172 | 30119.3 |
| abc transporter substrate-binding protein | RT97_31435 | Not Available | Positive | 6795282 - 6796775 | 54671.4 |
| abc transporter substrate-binding protein | RT97_31440 | Not Available | Positive | 6797004 - 6798491 | 53235.0 |
| amidase | RT97_31445 | Not Available | Positive | 6798488 - 6799912 | 50553.5 |
| membrane protein | RT97_31450 | Not Available | Negative | 6800136 - 6800762 | 22674.2 |
| lysr family transcriptional regulator | RT97_31455 | Not Available | Negative | 6800813 - 6801685 | 30911.4 |
| 4-oxalocrotonate tautomerase | RT97_31460 | Not Available | Positive | 6801797 - 6802195 | 14381.2 |
| hypothetical protein | RT97_31465 | Not Available | Positive | 6802227 - 6803603 | 49419.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
