Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sam-dependent methlyltransferase | RT97_31020 | Not Available | Positive | 6699808 - 6700650 | 29721.4 |
| hypothetical protein | RT97_31030 | Not Available | Negative | 6701848 - 6702627 | 29014.0 |
| hypothetical protein | RT97_31035 | Not Available | Negative | 6702678 - 6703598 | 32412.9 |
| hypothetical protein | RT97_31040 | Not Available | Negative | 6703595 - 6706288 | 96894.6 |
| hypothetical protein | RT97_31045 | Not Available | Positive | 6706497 - 6709127 | 96981.9 |
| diguanylate cyclase | RT97_31050 | Not Available | Positive | 6709281 - 6712388 | 113378.0 |
| pilus assembly protein pilb | RT97_31055 | Not Available | Positive | 6712480 - 6714366 | 69153.6 |
| diguanylate phosphodiesterase | RT97_31060 | Not Available | Negative | 6714386 - 6715129 | 26290.7 |
| phosphoketolase | RT97_31065 | Not Available | Positive | 6715471 - 6717843 | 87293.2 |
| membrane protein | RT97_31070 | Not Available | Negative | 6717857 - 6718630 | 27477.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
