Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydroxyproline-2-epimerase | RT97_03050 | Not Available | Positive | 656612 - 657547 | 32694.6 |
| d-amino acid oxidase | RT97_03055 | Not Available | Positive | 657559 - 658662 | 38657.4 |
| (2fe-2s)-binding protein | RT97_03060 | Not Available | Positive | 658659 - 658907 | 8560.42 |
| pyridine nucleotide-disulfide oxidoreductase | RT97_03065 | Not Available | Positive | 658904 - 660181 | 44167.2 |
| gntr family transcriptional regulator | RT97_03070 | Not Available | Positive | 660178 - 660870 | 25377.7 |
| fatty acid desaturase | RT97_03075 | Not Available | Positive | 660932 - 661864 | 35643.4 |
| abc transporter permease | RT97_03080 | Not Available | Negative | 661861 - 662748 | 31118.2 |
| acyltransferase | RT97_03085 | Not Available | Negative | 662789 - 664003 | 44651.6 |
| hypothetical protein | RT97_03090 | Not Available | Negative | 664038 - 665072 | 37694.7 |
| hypothetical protein | RT97_03095 | Not Available | Negative | 665088 - 665408 | 12039.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
