Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytic transglycosylase | RT97_30755 | Not Available | Positive | 6645398 - 6646498 | 39557.2 |
| n-methyl-d-aspartate receptor nmdar2c subunit | RT97_30760 | Not Available | Positive | 6646503 - 6647126 | 23598.9 |
| hypothetical protein | RT97_30765 | Not Available | Negative | 6647191 - 6647694 | 18525.3 |
| beta-ketoacyl synthase | RT97_30770 | Not Available | Negative | 6647718 - 6648791 | 37090.4 |
| acyl carrier protein | RT97_30775 | Not Available | Negative | 6648788 - 6649069 | 10029.0 |
| abc transporter | RT97_30780 | Not Available | Negative | 6649066 - 6650223 | 41030.4 |
| abc transporter | RT97_30785 | Not Available | Negative | 6650235 - 6651143 | 32272.1 |
| peptidase | RT97_30790 | Not Available | Negative | 6651148 - 6652128 | 36073.2 |
| hypothetical protein | RT97_30795 | Not Available | Negative | 6652125 - 6652520 | 14712.5 |
| 3-oxoacyl-acp synthase | RT97_30800 | Not Available | Negative | 6652605 - 6653741 | 41496.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
