Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | RT97_30495 | Not Available | Negative | 6596068 - 6596991 | 32725.5 |
| 4-hydroxyphenylpyruvate dioxygenase | RT97_30500 | Not Available | Positive | 6597191 - 6597985 | 29149.2 |
| hypothetical protein | RT97_30505 | Not Available | Positive | 6598038 - 6598634 | 22573.3 |
| abc transporter substrate-binding protein | RT97_30510 | Not Available | Positive | 6598702 - 6599706 | 35405.8 |
| transcriptional regulator | RT97_30515 | Not Available | Positive | 6599836 - 6600501 | 24793.9 |
| histidine kinase | RT97_30520 | Not Available | Positive | 6600673 - 6602073 | 50361.3 |
| tricarboxylic transport membrane protein | RT97_30525 | Not Available | Positive | 6602087 - 6603097 | 34851.9 |
| hypothetical protein | RT97_30530 | Not Available | Positive | 6603117 - 6603518 | 14492.1 |
| hypothetical protein | RT97_30535 | Not Available | Negative | 6603545 - 6604186 | 23309.3 |
| hypothetical protein | RT97_30540 | Not Available | Positive | 6604356 - 6604613 | 8551.56 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
