Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar transporter | RT97_29575 | Not Available | Positive | 6405692 - 6406231 | 20100.9 |
| c4-dicarboxylate abc transporter | RT97_29580 | Not Available | Positive | 6406297 - 6407853 | 55890.0 |
| hypothetical protein | RT97_29585 | Not Available | Positive | 6407850 - 6408338 | 18072.0 |
| membrane protein | RT97_29590 | Not Available | Positive | 6408437 - 6409462 | 35545.1 |
| abc transporter substrate-binding protein | RT97_29595 | Not Available | Negative | 6409526 - 6410605 | 39645.3 |
| 1-deoxy-d-xylulose-5-phosphate synthase | RT97_29600 | Not Available | Negative | 6410719 - 6412575 | 66215.6 |
| polyprenyl synthetase | RT97_29605 | Not Available | Negative | 6412755 - 6413669 | 31359.7 |
| exodeoxyribonuclease vii | RT97_29610 | Not Available | Negative | 6413666 - 6413932 | 9303.07 |
| rieske (2fe-2s) protein | RT97_29615 | Not Available | Positive | 6414113 - 6415252 | 43236.9 |
| membrane protein | RT97_29620 | Not Available | Positive | 6415400 - 6416317 | 32032.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
