Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_29525 | Not Available | Negative | 6394393 - 6394818 | 15702.1 |
| phosphohydrolase | RT97_29530 | Not Available | Negative | 6394839 - 6395405 | 20388.2 |
| deor faimly transcriptional regulator | RT97_29535 | Not Available | Negative | 6395417 - 6396874 | 53213.9 |
| phosphonoacetate hydrolase | RT97_29540 | Not Available | Negative | 6396909 - 6398135 | 43932.7 |
| gntr family transcriptional regulator | RT97_29545 | Not Available | Negative | 6398137 - 6398865 | 26737.8 |
| phosphonate abc transporter substrate-binding protein | RT97_29550 | Not Available | Positive | 6399021 - 6400058 | 37990.5 |
| amino acid abc transporter substrate-binding protein | RT97_29555 | Not Available | Positive | 6400134 - 6401273 | 41549.2 |
| phosphonate abc transporter permease | RT97_29560 | Not Available | Positive | 6401270 - 6403003 | 62771.6 |
| 2-aminoethylphosphonate--pyruvate aminotransferase | RT97_29565 | Not Available | Positive | 6403065 - 6404195 | 40534.8 |
| hypothetical protein | RT97_29570 | Not Available | Negative | 6404215 - 6405516 | 48242.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
