Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| allantoate amidohydrolase | RT97_29475 | Not Available | Negative | 6383449 - 6384693 | 43979.7 |
| abc transporter | RT97_29480 | Not Available | Negative | 6384766 - 6385479 | 25705.5 |
| abc transporter | RT97_29485 | Not Available | Negative | 6385541 - 6386311 | 27575.6 |
| abc transporter permease | RT97_29490 | Not Available | Negative | 6386308 - 6387267 | 34105.8 |
| abc transporter permease | RT97_29495 | Not Available | Negative | 6387273 - 6388133 | 30469.6 |
| branched-chain amino acid abc transporter substrate-binding protein | RT97_29500 | Not Available | Negative | 6388303 - 6389508 | 43026.9 |
| gntr family transcriptional regulator | RT97_29505 | Not Available | Positive | 6389768 - 6390532 | 29259.2 |
| lysr family transcriptional regulator | RT97_29510 | Not Available | Negative | 6390542 - 6391501 | 35013.4 |
| omega amino acid--pyruvate aminotransferase | RT97_29515 | Not Available | Positive | 6391609 - 6392964 | 48346.9 |
| fad-dependent oxidoreductase | RT97_29520 | Not Available | Negative | 6392987 - 6394375 | 50114.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
