Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerophosphodiester phosphodiesterase | RT97_02895 | Not Available | Positive | 626441 - 627802 | 48661.6 |
| nadph:quinone oxidoreductase | RT97_02900 | Not Available | Negative | 627818 - 628798 | 33904.1 |
| hypothetical protein | RT97_02905 | Not Available | Positive | 628896 - 629267 | 14015.2 |
| xaa-pro aminopeptidase | RT97_02910 | Not Available | Negative | 629385 - 630788 | 51871.4 |
| hypothetical protein | RT97_02915 | Not Available | Negative | 630795 - 631739 | 34755.4 |
| nucleotidyltransferase | RT97_02920 | Not Available | Negative | 631736 - 632497 | 26667.9 |
| s-adenosylmethionine decarboxylase | RT97_02925 | Not Available | Negative | 632620 - 633000 | 13330.1 |
| transketolase | RT97_02930 | Not Available | Positive | 633147 - 635249 | 75189.7 |
| glyceraldehyde-3-phosphate dehydrogenase | RT97_02935 | Not Available | Positive | 635382 - 636383 | 36262.6 |
| hypothetical protein | RT97_02940 | Not Available | Negative | 636460 - 636903 | 15985.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
