Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_29320 | Not Available | Positive | 6352058 - 6352645 | 20842.2 |
| mfs transporter | RT97_29325 | Not Available | Positive | 6352652 - 6353782 | 40915.8 |
| chorismate mutase | RT97_29330 | Not Available | Positive | 6353808 - 6354929 | 40331.0 |
| prephenate dehydrogenase | RT97_29335 | Not Available | Positive | 6354944 - 6355837 | 31386.6 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | RT97_29340 | Not Available | Positive | 6355839 - 6357860 | 72064.6 |
| 30s ribosomal protein s1 | RT97_29345 | Not Available | Positive | 6358082 - 6359770 | 61880.9 |
| integration host factor subunit beta | RT97_29350 | Not Available | Positive | 6359846 - 6360169 | 11991.4 |
| membrane protein | RT97_29355 | Not Available | Positive | 6360218 - 6360559 | 11923.5 |
| hypothetical protein | RT97_29360 | Not Available | Positive | 6360549 - 6361718 | 43310.1 |
| hypothetical protein | RT97_29365 | Not Available | Positive | 6361859 - 6362188 | 11532.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
