Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pseudouridine synthase | RT97_29275 | Not Available | Negative | 6341386 - 6342135 | 27279.0 |
| gamma-glutamyltranspeptidase | RT97_29280 | Not Available | Negative | 6342192 - 6343928 | 61356.4 |
| methyltransferase type 12 | RT97_29285 | Not Available | Negative | 6343990 - 6345585 | 58287.0 |
| hypothetical protein | RT97_29290 | Not Available | Positive | 6346058 - 6346336 | 10014.9 |
| hypothetical protein | RT97_29295 | Not Available | Positive | 6346346 - 6346558 | 7660.31 |
| Tmrna,resume consensus sequence (at 84): actaactgcaaacgacga | Not Available | Not Available | Positive | 6346620 - 6347006 | Not Available |
| phosphoglycolate phosphatase | RT97_29300 | Not Available | Negative | 6347019 - 6347687 | 23842.6 |
| 3-demethylubiquinone-9 3-methyltransferase | RT97_29305 | Not Available | Negative | 6347684 - 6348412 | 26612.1 |
| membrane protein | RT97_29310 | Not Available | Negative | 6348541 - 6349191 | 22855.2 |
| dna gyrase subunit a | RT97_29315 | Not Available | Positive | 6349416 - 6352061 | 97951.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
