Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porin | RT97_29175 | Not Available | Positive | 6324233 - 6324814 | 20484.3 |
| porin | RT97_29180 | Not Available | Positive | 6324815 - 6325369 | 19737.2 |
| hypothetical protein | RT97_29185 | Not Available | Negative | 6325370 - 6325742 | 14077.0 |
| membrane protein | RT97_29190 | Not Available | Negative | 6325743 - 6326257 | 18081.1 |
| hypothetical protein | RT97_29195 | Not Available | Negative | 6326297 - 6326497 | 7335.17 |
| lysr family transcriptional regulator | RT97_29200 | Not Available | Negative | 6326600 - 6327523 | 33077.6 |
| mandelate racemase | RT97_29205 | Not Available | Positive | 6327653 - 6328819 | 42451.0 |
| alpha/beta hydrolase | RT97_29210 | Not Available | Negative | 6328824 - 6329501 | 23942.1 |
| hypothetical protein | RT97_29215 | Not Available | Negative | 6329498 - 6330205 | 25955.3 |
| exodeoxyribonuclease iii | RT97_29220 | Not Available | Positive | 6330454 - 6331239 | 29650.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
