Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spfh domain/band 7 family protein 2 | RT97_02845 | Not Available | Positive | 609600 - 610658 | 38006.9 |
| membrane protein | RT97_02850 | Not Available | Positive | 610777 - 612261 | 53615.2 |
| hypothetical protein | RT97_02855 | Not Available | Positive | 612310 - 612528 | 7830.04 |
| spermidine synthase | RT97_02860 | Not Available | Positive | 612628 - 614178 | 56804.8 |
| fumarate reductase | RT97_02865 | Not Available | Positive | 614189 - 615820 | 58654.4 |
| saccharopine dehydrogenase | RT97_02870 | Not Available | Positive | 615817 - 616935 | 39007.0 |
| epimerase | RT97_02875 | Not Available | Positive | 616932 - 617309 | 13494.9 |
| membrane protein | RT97_02880 | Not Available | Positive | 617306 - 617782 | 17702.0 |
| alpha-2-macroglobulin | RT97_02885 | Not Available | Positive | 617855 - 623920 | 220731.0 |
| penicillin-binding protein | RT97_02890 | Not Available | Positive | 624088 - 626367 | 82746.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
