Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein | RT97_28530 | Not Available | Negative | 6177864 - 6178574 | 25529.6 |
| hypothetical protein | RT97_28545 | Not Available | Negative | 6180828 - 6182438 | 53964.9 |
| tctc | RT97_28550 | Not Available | Negative | 6183079 - 6184080 | 35514.5 |
| hypothetical protein | RT97_28555 | Not Available | Negative | 6184174 - 6185154 | 33481.8 |
| beta-ketoadipyl coa thiolase | RT97_28560 | Not Available | Negative | 6185160 - 6186365 | 41765.3 |
| 3-oxoadipate coa-transferase | RT97_28565 | Not Available | Negative | 6186400 - 6187047 | 22877.7 |
| 3-oxoadipate coa-transferase | RT97_28570 | Not Available | Negative | 6187044 - 6187745 | 24495.7 |
| iclr family transcriptional regulator | RT97_28575 | Not Available | Positive | 6187854 - 6188648 | 28543.7 |
| receptor | RT97_28580 | Not Available | Negative | 6188773 - 6189777 | 34200.8 |
| abc transporter permease | RT97_28585 | Not Available | Negative | 6189910 - 6190926 | 36281.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
