Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna ligase | RT97_28480 | Not Available | Negative | 6165880 - 6168453 | 93645.1 |
| dna-binding protein | RT97_28485 | Not Available | Negative | 6168465 - 6169451 | 36258.3 |
| succinylglutamate desuccinylase | RT97_28490 | Not Available | Negative | 6169517 - 6170491 | 35315.8 |
| hypothetical protein | RT97_28495 | Not Available | Positive | 6170671 - 6170943 | 9755.04 |
| ribulose-phosphate 3-epimerase | RT97_28500 | Not Available | Negative | 6170933 - 6171625 | 24420.3 |
| protein apag | RT97_28505 | Not Available | Positive | 6171686 - 6172081 | 14162.8 |
| recombinase | RT97_28510 | Not Available | Positive | 6172289 - 6174271 | 71316.5 |
| sodium:proton exchanger | RT97_28515 | Not Available | Positive | 6174268 - 6175539 | 44299.4 |
| gamma-glutamyl ligase | RT97_28520 | Not Available | Positive | 6175536 - 6176750 | 45794.5 |
| thiamine monophosphate kinase | RT97_28525 | Not Available | Positive | 6176901 - 6177863 | 32872.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
