Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter permease | RT97_28375 | Not Available | Positive | 6128464 - 6129348 | 31078.8 |
| abc transporter | RT97_28380 | Not Available | Positive | 6129352 - 6130341 | 35050.2 |
| peptide abc transporter atp-binding protein | RT97_28385 | Not Available | Positive | 6130338 - 6131150 | 29607.8 |
| abc transporter substrate-binding protein | RT97_28390 | Not Available | Positive | 6131191 - 6132255 | 38198.1 |
| type vi secretion protein | RT97_28395 | Not Available | Negative | 6132894 - 6133481 | 20909.0 |
| type vi secretion protein | RT97_28400 | Not Available | Negative | 6133529 - 6137128 | 132471.0 |
| hypothetical protein | RT97_28405 | Not Available | Negative | 6137125 - 6138489 | 48459.1 |
| type vi secretion protein | RT97_28410 | Not Available | Negative | 6138632 - 6139963 | 49343.6 |
| phosphonate abc transporter substrate-binding protein | RT97_28415 | Not Available | Negative | 6140121 - 6141149 | 37696.4 |
| phosphonate abc transporter substrate-binding protein | RT97_28420 | Not Available | Negative | 6141295 - 6142275 | 36008.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
