Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_02795 | Not Available | Negative | 596695 - 597156 | 14963.1 |
| peptidase m20 | RT97_02800 | Not Available | Negative | 597256 - 598602 | 47002.6 |
| 16s rrna methyltransferase | RT97_02805 | Not Available | Negative | 598691 - 599434 | 25631.7 |
| aminoglycoside phosphotransferase | RT97_02810 | Not Available | Negative | 599504 - 600682 | 43380.2 |
| lps biosynthesis protein | RT97_02815 | Not Available | Positive | 600920 - 603535 | 97188.2 |
| molecular chaperone sura | RT97_02820 | Not Available | Positive | 603557 - 604966 | 51160.8 |
| 16s rrna methyltransferase | RT97_02825 | Not Available | Positive | 604970 - 605734 | 28384.6 |
| barnase inhibitor | RT97_02830 | Not Available | Negative | 606008 - 606427 | 15856.8 |
| guanine-specific ribonuclease n1 and t1 | RT97_02835 | Not Available | Negative | 606484 - 606897 | 15035.8 |
| malate dehydrogenase | RT97_02840 | Not Available | Negative | 607080 - 609428 | 85170.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
