Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr family transcriptional regulator | RT97_27690 | Not Available | Negative | 5991693 - 5992349 | 25103.2 |
| thiamine pyrophosphate-binding protein | RT97_27695 | Not Available | Positive | 5992443 - 5994167 | 61638.6 |
| preprotein translocase subunit secd | RT97_27700 | Not Available | Negative | 5994133 - 5994426 | 10331.3 |
| hypothetical protein | RT97_27710 | Not Available | Negative | 5995349 - 5995792 | 15145.0 |
| membrane protein | RT97_27715 | Not Available | Negative | 5995948 - 5996871 | 32237.5 |
| gamma-glutamyl cyclotransferase | RT97_27720 | Not Available | Positive | 5996908 - 5997321 | 14892.9 |
| isocitrate lyase | RT97_27725 | Not Available | Positive | 5997540 - 5998859 | 48510.3 |
| threonyl-trna synthetase | RT97_27730 | Not Available | Positive | 5999192 - 6001099 | 72412.5 |
| translation initiation factor if-3 | RT97_27735 | Not Available | Positive | 6001276 - 6001824 | 20006.5 |
| 50s ribosomal protein l35 | RT97_27740 | Not Available | Positive | 6001979 - 6002182 | 7482.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
