Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| insertase | RT97_02695 | Not Available | Positive | 576412 - 578103 | 62579.2 |
| trna modification gtpase trme | RT97_02700 | Not Available | Positive | 578189 - 579598 | 49275.9 |
| crp/fnr family transcriptional regulator | RT97_02705 | Not Available | Positive | 579699 - 580160 | 16590.0 |
| hypothetical protein | RT97_02710 | Not Available | Positive | 580260 - 581204 | 32372.6 |
| potassium transporter | RT97_02715 | Not Available | Negative | 581314 - 583299 | 71356.9 |
| arabinose 5-phosphate isomerase | RT97_02720 | Not Available | Positive | 583387 - 584388 | 34630.3 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | RT97_02725 | Not Available | Positive | 584388 - 584936 | 19707.8 |
| lipopolysaccharide export system protein lptc | RT97_02730 | Not Available | Positive | 584942 - 585595 | 23742.1 |
| short-chain dehydrogenase | RT97_02735 | Not Available | Positive | 585615 - 586400 | 27854.6 |
| rna-binding protein | RT97_02740 | Not Available | Negative | 586478 - 587026 | 16755.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
