Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chemotaxis protein chey | RT97_26920 | Not Available | Negative | 5835438 - 5835836 | 14721.8 |
| phosphomethylpyrimidine kinase | RT97_26925 | Not Available | Positive | 5836198 - 5837160 | 34400.0 |
| glutamate-1-semialdehyde aminotransferase | RT97_26930 | Not Available | Positive | 5837164 - 5838444 | 45189.6 |
| hypothetical protein | RT97_26935 | Not Available | Positive | 5838448 - 5838936 | 17960.4 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase | RT97_26940 | Not Available | Negative | 5839055 - 5840662 | 57055.3 |
| fis family transcriptional regulator | RT97_26945 | Not Available | Negative | 5840678 - 5840914 | 9088.16 |
| pp_05090 | RT97_26950 | Not Available | Negative | 5840934 - 5841992 | Not Available |
| membrane protein | RT97_26955 | Not Available | Positive | 5842167 - 5842637 | 17163.5 |
| glutathione s-transferase | RT97_26960 | Not Available | Negative | 5842645 - 5843319 | 24903.1 |
| peptidase s1 | RT97_26965 | Not Available | Positive | 5843632 - 5844438 | 28055.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
