Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein | RT97_00200 | Not Available | Negative | 40078 - 41262 | 42850.7 |
| abc transporter permease | RT97_00205 | Not Available | Negative | 41298 - 42131 | 30410.8 |
| mannosyltransferase | RT97_00210 | Not Available | Negative | 42128 - 42943 | 29667.6 |
| abc transporter substrate-binding protein | RT97_00215 | Not Available | Negative | 42996 - 44030 | 36159.7 |
| glutathione metabolism protein | RT97_00220 | Not Available | Negative | 44190 - 44582 | 14250.6 |
| recombination protein recr | RT97_00225 | Not Available | Negative | 44611 - 45201 | 20993.3 |
| nucleoid-associated protein | RT97_00230 | Not Available | Negative | 45316 - 45648 | 11867.6 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 46229 - 46588 | Not Available |
| dna polymerase iii subunits gamma and tau | RT97_00235 | Not Available | Negative | 45729 - 47594 | 66531.6 |
| hypothetical protein | RT97_00240 | Not Available | Positive | 47943 - 49655 | 63197.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
