Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase m23 | RT97_25935 | Not Available | Negative | 5617001 - 5617909 | 31993.5 |
| pseudouridine synthase | RT97_25940 | Not Available | Negative | 5617957 - 5618505 | 20496.8 |
| hypothetical protein | RT97_25945 | Not Available | Positive | 5618632 - 5618928 | 10152.1 |
| glutaminyl-trna synthetase | RT97_25950 | Not Available | Negative | 5618986 - 5620800 | 67641.5 |
| signal peptide protein | RT97_25955 | Not Available | Positive | 5620948 - 5621301 | 12503.8 |
| lytr family transcriptional regulator | RT97_25960 | Not Available | Negative | 5621383 - 5622234 | 30525.7 |
| histidine kinase | RT97_25965 | Not Available | Negative | 5622249 - 5623322 | 38833.5 |
| membrane protein | RT97_25970 | Not Available | Negative | 5623319 - 5623615 | 10851.3 |
| fatty acid hydroxylase | RT97_25975 | Not Available | Negative | 5623612 - 5624568 | 36852.8 |
| hypothetical protein | RT97_25980 | Not Available | Negative | 5624623 - 5625144 | 18183.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
