Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase | RT97_25730 | Not Available | Positive | 5556233 - 5557132 | 32560.7 |
| hypothetical protein | RT97_25735 | Not Available | Positive | 5557242 - 5557946 | 26264.0 |
| hypothetical protein | RT97_25740 | Not Available | Positive | 5558041 - 5559234 | 44518.9 |
| fe2+/zn2+ uptake regulation protein | RT97_25745 | Not Available | Negative | 5559350 - 5559820 | 17023.4 |
| hypothetical protein | RT97_25750 | Not Available | Positive | 5559945 - 5560922 | 35045.0 |
| tryptophan 2,3-dioxygenase | RT97_25755 | Not Available | Positive | 5561004 - 5561939 | 35604.4 |
| monooxygenase | RT97_25760 | Not Available | Positive | 5561951 - 5563117 | 41921.6 |
| abc transporter substrate-binding protein | RT97_25765 | Not Available | Positive | 5563230 - 5564216 | 34706.9 |
| hypothetical protein | RT97_25770 | Not Available | Negative | 5564223 - 5564486 | 9404.61 |
| carboxylesterase | RT97_25775 | Not Available | Positive | 5564663 - 5565325 | 23414.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
