Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_25630 | Not Available | Positive | 5541105 - 5541386 | 10560.2 |
| hypothetical protein | RT97_25635 | Not Available | Positive | 5541383 - 5542138 | 27796.8 |
| universal stress protein uspa | RT97_25640 | Not Available | Positive | 5542267 - 5542707 | 15000.2 |
| pseudouridine synthase | RT97_25645 | Not Available | Negative | 5542757 - 5543428 | 24657.9 |
| mfs transporter | RT97_25650 | Not Available | Positive | 5543594 - 5544811 | 42261.3 |
| (2fe-2s)-binding protein | RT97_25655 | Not Available | Negative | 5544808 - 5545089 | 10061.0 |
| hypothetical protein | RT97_25660 | Not Available | Negative | 5545086 - 5545388 | 11376.6 |
| gcn5 family acetyltransferase | RT97_25665 | Not Available | Positive | 5545621 - 5546139 | 19269.0 |
| peptidase | RT97_25670 | Not Available | Positive | 5546144 - 5546839 | 25036.4 |
| membrane protein | RT97_25675 | Not Available | Positive | 5546933 - 5547841 | 31256.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
