Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylacetic acid degradation protein | RT97_25530 | Not Available | Negative | 5516927 - 5517331 | 13890.9 |
| acetyl-coa acetyltransferase | RT97_25535 | Not Available | Negative | 5517388 - 5518563 | 40762.2 |
| hypothetical protein | RT97_25540 | Not Available | Negative | 5518604 - 5520079 | 52583.5 |
| 3-hydroxyacyl-coa dehydrogenase | RT97_25545 | Not Available | Negative | 5520231 - 5522336 | 75748.1 |
| mannosyltransferase | RT97_25550 | Not Available | Negative | 5522620 - 5523315 | 25669.3 |
| branched-chain amino acid abc transporter substrate-binding protein | RT97_25555 | Not Available | Negative | 5523317 - 5524093 | 27847.7 |
| abc transporter permease | RT97_25560 | Not Available | Negative | 5524094 - 5525398 | 47167.0 |
| abc transporter permease | RT97_25565 | Not Available | Negative | 5525402 - 5526355 | 34075.1 |
| branched-chain amino acid abc transporter substrate-binding protein | RT97_25570 | Not Available | Negative | 5526433 - 5527674 | 45332.0 |
| branched-chain amino acid abc transporter substrate-binding protein | RT97_25575 | Not Available | Negative | 5527878 - 5529107 | 44692.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
