Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc subunit b | RT97_02490 | Not Available | Positive | 530337 - 532454 | 79959.9 |
| dna-binding protein | RT97_02495 | Not Available | Positive | 532689 - 533225 | 19304.4 |
| cysteine desulfurase | RT97_02500 | Not Available | Positive | 533314 - 534534 | 45105.1 |
| scaffolding protein | RT97_02505 | Not Available | Positive | 534585 - 535004 | 14624.3 |
| iron-sulfur cluster assembly protein | RT97_02510 | Not Available | Positive | 535006 - 535329 | 11830.1 |
| co-chaperone hscb | RT97_02515 | Not Available | Positive | 535393 - 535911 | 19500.9 |
| molecular chaperone hsca | RT97_02520 | Not Available | Positive | 535918 - 537780 | 65202.4 |
| 2fe-2s ferredoxin | RT97_02525 | Not Available | Positive | 537790 - 538128 | 12434.6 |
| dna polymerase iii subunit epsilon | RT97_02530 | Not Available | Positive | 538128 - 538850 | 26228.1 |
| Trna-val | Not Available | Not Available | Positive | 538908 - 538982 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
