Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc subunit a | RT97_23530 | Not Available | Negative | 5083415 - 5086039 | 94208.8 |
| glycoside hydrolase | RT97_23535 | Not Available | Positive | 5086168 - 5087355 | 44388.7 |
| d-aminoacylase | RT97_23540 | Not Available | Negative | 5087357 - 5088820 | 52180.4 |
| alanine racemase | RT97_23545 | Not Available | Negative | 5088857 - 5089975 | 39376.2 |
| mfs transporter | RT97_23550 | Not Available | Negative | 5090016 - 5090987 | 34072.6 |
| lysr family transcriptional regulator | RT97_23555 | Not Available | Positive | 5091183 - 5092049 | 31639.0 |
| homoserine dehydrogenase | RT97_23565 | Not Available | Negative | 5092356 - 5093717 | 46839.8 |
| gcn5 family acetyltransferase | RT97_23570 | Not Available | Positive | 5094026 - 5096725 | 96602.5 |
| hypothetical protein | RT97_23575 | Not Available | Negative | 5096747 - 5099887 | 111564.0 |
| membrane protein | RT97_23580 | Not Available | Positive | 5100106 - 5101146 | 38446.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
