Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c | RT97_23430 | Not Available | Positive | 5051732 - 5052034 | 10256.5 |
| cytochrome c oxidase subunit ii | RT97_23435 | Not Available | Positive | 5052031 - 5052966 | 33094.0 |
| cytochrome b561 | RT97_23440 | Not Available | Positive | 5052945 - 5055470 | 91964.0 |
| 4-alpha-glucanotransferase | RT97_23445 | Not Available | Negative | 5055471 - 5060639 | 188799.0 |
| 1,4-alpha-glucan branching protein | RT97_23450 | Not Available | Negative | 5060629 - 5062467 | 67765.5 |
| glycogen debranching protein | RT97_23455 | Not Available | Negative | 5062523 - 5064685 | 81076.2 |
| hypothetical protein | RT97_23460 | Not Available | Negative | 5064743 - 5065498 | 27385.0 |
| alpha-amylase | RT97_23465 | Not Available | Negative | 5065535 - 5068849 | 125027.0 |
| alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase | RT97_23470 | Not Available | Negative | 5068869 - 5070935 | 78053.6 |
| glycogen branching protein | RT97_23475 | Not Available | Negative | 5070935 - 5072833 | 71083.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
