Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_23200 | Not Available | Positive | 4991767 - 4992186 | 15706.5 |
| acetyl-coa acetyltransferase | RT97_23205 | Not Available | Positive | 4992183 - 4993385 | 41836.5 |
| alpha/beta hydrolase | RT97_23210 | Not Available | Positive | 4993441 - 4994329 | 32626.4 |
| pilus assembly protein cpab | RT97_23215 | Not Available | Negative | 4994519 - 4995361 | 29032.3 |
| peptidase a24 | RT97_23220 | Not Available | Negative | 4995410 - 4995994 | 20262.5 |
| luxr family transcriptional regulator | RT97_23225 | Not Available | Positive | 4996809 - 4997612 | 29406.6 |
| hypothetical protein | RT97_23230 | Not Available | Positive | 4998041 - 4998718 | 25141.6 |
| hypothetical protein | RT97_23235 | Not Available | Positive | 4998738 - 5000165 | 51612.2 |
| secretion protein hyld | RT97_23240 | Not Available | Negative | 5000128 - 5001477 | 49529.9 |
| abc transporter atpase | RT97_23245 | Not Available | Negative | 5001515 - 5003197 | 60715.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
