Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilus assembly protein tade | RT97_22940 | Not Available | Positive | 4922404 - 4922832 | 15173.7 |
| histidine kinase | RT97_22945 | Not Available | Positive | 4922852 - 4924003 | 41106.4 |
| pilus assembly protein cpaf | RT97_22950 | Not Available | Positive | 4924039 - 4925409 | 50791.0 |
| pilus assembly protein tadb | RT97_22955 | Not Available | Positive | 4925419 - 4926411 | 36838.1 |
| type ii secretion system protein | RT97_22960 | Not Available | Positive | 4926423 - 4927331 | 33249.5 |
| luxr family transcriptional regulator | RT97_22965 | Not Available | Negative | 4927356 - 4928042 | 24796.2 |
| histidine kinase | RT97_22970 | Not Available | Negative | 4928109 - 4929791 | 61179.2 |
| hypothetical protein | RT97_22975 | Not Available | Negative | 4930100 - 4930570 | 17293.0 |
| hypothetical protein | RT97_22980 | Not Available | Negative | 4930794 - 4932209 | 45294.3 |
| hypothetical protein | RT97_22985 | Not Available | Negative | 4932206 - 4933039 | 30789.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
