Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter permease | RT97_22835 | Not Available | Negative | 4903128 - 4903781 | 23469.4 |
| polar amino acid abc transporter permease | RT97_22840 | Not Available | Negative | 4903800 - 4904462 | 23820.8 |
| amino acid abc transporter substrate-binding protein | RT97_22845 | Not Available | Negative | 4904478 - 4905278 | 28208.2 |
| gntr family transcriptional regulator | RT97_22850 | Not Available | Negative | 4905275 - 4906048 | 27668.2 |
| laci family transcriptional regulator | RT97_22855 | Not Available | Negative | 4906220 - 4907197 | 34594.9 |
| peroxiredoxin | RT97_22860 | Not Available | Negative | 4907239 - 4907679 | 15211.0 |
| long-chain fatty acid--coa ligase | RT97_22870 | Not Available | Positive | 4908562 - 4910253 | 62161.7 |
| nuclease | RT97_22875 | Not Available | Positive | 4910338 - 4910865 | 19807.6 |
| hypothetical protein | RT97_22880 | Not Available | Negative | 4910902 - 4911150 | 9074.3 |
| pyridine nucleotide-disulfide oxidoreductase | RT97_22885 | Not Available | Negative | 4911167 - 4912513 | 47388.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
