Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphogluconate dehydratase | RT97_22630 | Not Available | Positive | 4861629 - 4863464 | 64327.3 |
| keto-deoxy-phosphogluconate aldolase | RT97_22635 | Not Available | Positive | 4863626 - 4864261 | 21792.4 |
| haloacid dehalogenase | RT97_22640 | Not Available | Positive | 4864263 - 4864991 | 26416.7 |
| hypothetical protein | RT97_22645 | Not Available | Negative | 4865013 - 4867160 | 73372.3 |
| pyridoxamine 5-phosphate oxidase | RT97_22650 | Not Available | Negative | 4867320 - 4867877 | 20651.8 |
| glyoxalase i | RT97_22655 | Not Available | Negative | 4867896 - 4868309 | 14950.8 |
| glutathione s-transferase | RT97_22660 | Not Available | Negative | 4868374 - 4869054 | 25244.4 |
| abc transporter | RT97_22665 | Not Available | Negative | 4869155 - 4869838 | 24411.4 |
| iron abc transporter permease | RT97_22670 | Not Available | Negative | 4869835 - 4871517 | 58859.2 |
| iron abc transporter substrate-binding protein | RT97_22675 | Not Available | Negative | 4871555 - 4872613 | 37623.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
