Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyoxalase | RT97_21860 | Not Available | Positive | 4687380 - 4687814 | 15433.9 |
| shikimate dehydrogenase | RT97_21865 | Not Available | Negative | 4687829 - 4688797 | 34221.4 |
| alpha/beta hydrolase | RT97_21870 | Not Available | Negative | 4688892 - 4689800 | 32741.6 |
| x-pro dipeptidyl-peptidase | RT97_21875 | Not Available | Positive | 4690319 - 4692196 | 67692.5 |
| acyltransferase | RT97_21880 | Not Available | Positive | 4692211 - 4693206 | 37145.2 |
| hypothetical protein | RT97_21885 | Not Available | Positive | 4693385 - 4693630 | 8297.78 |
| hypothetical protein | RT97_21890 | Not Available | Positive | 4693683 - 4694111 | 15990.1 |
| short-chain dehydrogenase | RT97_21895 | Not Available | Negative | 4694149 - 4694898 | 25551.0 |
| lysr family transcriptional regulator | RT97_21900 | Not Available | Positive | 4695005 - 4695892 | 31405.3 |
| catalase | RT97_21905 | Not Available | Negative | 4695915 - 4696502 | 22187.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
