Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RT97_21505 | Not Available | Positive | 4620145 - 4620810 | 24406.4 |
| serine/threonine protein phosphatase | RT97_21510 | Not Available | Negative | 4620843 - 4621631 | 28490.1 |
| hypothetical protein | RT97_21515 | Not Available | Positive | 4621740 - 4621943 | 7861.48 |
| helicase | RT97_21520 | Not Available | Positive | 4621940 - 4624006 | 75195.8 |
| competence protein coml | RT97_21525 | Not Available | Negative | 4624021 - 4624827 | 30218.6 |
| pseudouridine synthase | RT97_21530 | Not Available | Positive | 4624899 - 4625867 | 35113.4 |
| chromosome segregation and condensation protein | RT97_21535 | Not Available | Positive | 4625997 - 4626911 | 32463.7 |
| pseudouridine synthase | RT97_21540 | Not Available | Positive | 4626898 - 4628700 | 64543.8 |
| nucleoside diphosphate kinase | RT97_21545 | Not Available | Positive | 4628853 - 4629278 | 15253.3 |
| 50s rrna methyltransferase | RT97_21550 | Not Available | Positive | 4629300 - 4630454 | 42789.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
