Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate abc transporter permease | RT97_02050 | Not Available | Negative | 445322 - 445834 | 19362.9 |
| c4-dicarboxylate abc transporter substrate-binding protein | RT97_02055 | Not Available | Negative | 445956 - 446930 | 35178.4 |
| electron transfer flavoprotein-ubiquinone oxidoreductase | RT97_02060 | Not Available | Negative | 447150 - 448847 | 61945.2 |
| short-chain dehydrogenase | RT97_02065 | Not Available | Positive | 448966 - 449748 | 27246.8 |
| transporter | RT97_02070 | Not Available | Positive | 449808 - 450656 | 29984.1 |
| thioesterase | RT97_02075 | Not Available | Positive | 450653 - 451075 | 16064.5 |
| hypothetical protein | RT97_02080 | Not Available | Negative | 451103 - 451648 | 20250.2 |
| histidine kinase | RT97_02085 | Not Available | Negative | 451944 - 453299 | 49423.8 |
| transcriptional regulator | RT97_02090 | Not Available | Negative | 453305 - 453979 | 24772.7 |
| phosphoesterase | RT97_02095 | Not Available | Positive | 454121 - 454828 | 25424.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
