Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urea abc transporter permease | RT97_20935 | Not Available | Negative | 4498380 - 4499282 | 32419.3 |
| abc transporter substrate-binding protein | RT97_20940 | Not Available | Negative | 4499288 - 4499960 | 24237.1 |
| dna-binding protein | RT97_20945 | Not Available | Positive | 4499961 - 4500668 | 24904.0 |
| glutamine cyclotransferase | RT97_20950 | Not Available | Positive | 4500751 - 4501389 | 22752.5 |
| thioredoxin | RT97_20955 | Not Available | Positive | 4501419 - 4502213 | 30364.8 |
| hypothetical protein | RT97_20960 | Not Available | Positive | 4502229 - 4502819 | 20038.9 |
| hypothetical protein | RT97_20965 | Not Available | Negative | 4502816 - 4503082 | 9530.0 |
| alpha/beta hydrolase | RT97_20970 | Not Available | Negative | 4503138 - 4503998 | 31317.6 |
| merr family transcriptional regulator | RT97_20975 | Not Available | Negative | 4504066 - 4504503 | 15719.2 |
| sam-dependent methyltransferase | RT97_20980 | Not Available | Positive | 4504582 - 4505436 | 30454.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
