Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | RT97_20635 | Not Available | Positive | 4440214 - 4441131 | 34240.5 |
| feruloyl-coa synthase | RT97_20640 | Not Available | Negative | 4441132 - 4442940 | 65327.6 |
| 3-hydroxyacyl-coa dehydrogenase | RT97_20645 | Not Available | Negative | 4442942 - 4443886 | 33614.3 |
| abc transporter permease | RT97_20650 | Not Available | Negative | 4443883 - 4445097 | 43382.5 |
| 3-keto-5-aminohexanoate cleavage protein | RT97_20655 | Not Available | Negative | 4445141 - 4446064 | 33456.3 |
| crp/fnr family transcriptional regulator | RT97_20660 | Not Available | Positive | 4446190 - 4446903 | 26287.5 |
| 4-oxalocrotonate tautomerase | RT97_20665 | Not Available | Negative | 4446933 - 4447157 | 8644.32 |
| 3-oxoacyl-acp reductase | RT97_20670 | Not Available | Negative | 4447196 - 4447936 | 25552.8 |
| lysr family transcriptional regulator | RT97_20675 | Not Available | Positive | 4448043 - 4448954 | 33840.8 |
| abc transporter | RT97_20680 | Not Available | Negative | 4449059 - 4449760 | 25336.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
