Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | RT97_20480 | Not Available | Positive | 4408789 - 4409973 | 42444.6 |
| abc transporter permease | RT97_20485 | Not Available | Positive | 4409970 - 4411799 | 64214.0 |
| osmc family protein | RT97_20490 | Not Available | Positive | 4411813 - 4412391 | 20717.7 |
| branched-chain amino acid abc transporter atp-binding protein | RT97_20495 | Not Available | Positive | 4412354 - 4413223 | 31304.2 |
| abc transporter atp-binding protein | RT97_20500 | Not Available | Positive | 4413292 - 4414068 | 27842.1 |
| hxlr family transcriptional regulator | RT97_20510 | Not Available | Negative | 4414991 - 4415431 | 15957.5 |
| deaminase | RT97_20515 | Not Available | Positive | 4415544 - 4416116 | 21186.4 |
| membrane protein | RT97_20520 | Not Available | Positive | 4416241 - 4416693 | 16967.9 |
| hypothetical protein | RT97_20525 | Not Available | Negative | 4416775 - 4417038 | 9604.22 |
| transcriptional regulator | RT97_20530 | Not Available | Negative | 4417175 - 4418119 | 34618.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
