Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endoribonuclease l-psp | RT97_20380 | Not Available | Negative | 4390605 - 4391090 | 16921.7 |
| 1,2-oxophytodienoate reductase | RT97_20385 | Not Available | Negative | 4391151 - 4392254 | 39259.4 |
| terpene utilization protein atua | RT97_20390 | Not Available | Negative | 4392362 - 4394194 | 63917.6 |
| enoyl-coa hydratase | RT97_20395 | Not Available | Negative | 4394191 - 4394973 | 28120.2 |
| glutathione s-transferase | RT97_20400 | Not Available | Negative | 4395119 - 4395727 | 22580.1 |
| membrane protein | RT97_20405 | Not Available | Positive | 4395921 - 4396106 | 6016.92 |
| transglutaminase | RT97_20410 | Not Available | Positive | 4396263 - 4397150 | 32534.0 |
| trna uridine 5-carboxymethylaminomethyl modification protein | RT97_20415 | Not Available | Positive | 4397327 - 4399285 | 71656.2 |
| 16s rrna methyltransferase | RT97_20420 | Not Available | Positive | 4399282 - 4399923 | 22781.8 |
| amino acid transporter lyse | RT97_20425 | Not Available | Positive | 4400039 - 4400653 | 21572.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
