Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nuclease pin | RT97_20230 | Not Available | Negative | 4357171 - 4358805 | 57176.2 |
| polyphosphate kinase | RT97_20235 | Not Available | Positive | 4358962 - 4359882 | 35943.1 |
| phospholipase | RT97_20240 | Not Available | Positive | 4359932 - 4360975 | 36740.8 |
| mfs transporter | RT97_20245 | Not Available | Positive | 4361142 - 4362512 | 46906.9 |
| nucleotide pyrophosphohydrolase | RT97_20250 | Not Available | Positive | 4362634 - 4362951 | 11936.2 |
| hypothetical protein | RT97_20255 | Not Available | Positive | 4363079 - 4363762 | 24700.4 |
| branched-chain amino acid abc transporter substrate-binding protein | RT97_20260 | Not Available | Positive | 4363880 - 4365148 | 45959.2 |
| glycosyl transferase | RT97_20265 | Not Available | Negative | 4365236 - 4366370 | 41302.1 |
| hypothetical protein | RT97_20270 | Not Available | Negative | 4366381 - 4366950 | 21590.9 |
| exosortase | RT97_20275 | Not Available | Negative | 4366931 - 4367860 | 32485.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
