Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transglutaminase | RT97_19655 | Not Available | Negative | 4237417 - 4238406 | 36038.2 |
| abc transporter substrate-binding protein | RT97_19660 | Not Available | Negative | 4238422 - 4239234 | 28157.5 |
| a circularly permuted atpgrasp family protein | RT97_19665 | Not Available | Negative | 4239456 - 4242212 | 99286.0 |
| imp dehydrogenase | RT97_19670 | Not Available | Negative | 4242276 - 4245794 | 130891.0 |
| competence protein comec | RT97_19675 | Not Available | Positive | 4245936 - 4248374 | 87714.6 |
| enoyl-coa hydratase | RT97_19680 | Not Available | Positive | 4248683 - 4249438 | 27080.6 |
| hypothetical protein | RT97_19685 | Not Available | Positive | 4249604 - 4251100 | 55758.9 |
| hypothetical protein | RT97_19690 | Not Available | Positive | 4251130 - 4252086 | 36657.4 |
| sulfatase | RT97_19695 | Not Available | Negative | 4252100 - 4253767 | 61223.4 |
| glycerol kinase | RT97_19700 | Not Available | Negative | 4253877 - 4255370 | 53456.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
