Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | RT97_19400 | Not Available | Positive | 4182201 - 4183358 | 40330.6 |
| spermidine/putrescine abc transporter substrate-binding protein | RT97_19405 | Not Available | Negative | 4183359 - 4184426 | 38220.4 |
| fad-dependent oxidoreductase | RT97_19410 | Not Available | Negative | 4184439 - 4185626 | 41873.9 |
| (2fe-2s)-binding protein | RT97_19415 | Not Available | Negative | 4185623 - 4187032 | 49812.1 |
| ferredoxin | RT97_19420 | Not Available | Negative | 4187029 - 4187343 | 10682.8 |
| abc transporter permease | RT97_19425 | Not Available | Negative | 4187344 - 4188138 | 28463.7 |
| abc transporter permease | RT97_19430 | Not Available | Negative | 4188143 - 4189003 | 30978.1 |
| spermidine/putrescine abc transporter atpase | RT97_19435 | Not Available | Negative | 4189000 - 4190070 | 38678.7 |
| iclr family transcriptional regulator | RT97_19440 | Not Available | Positive | 4190276 - 4191154 | 31074.5 |
| hypothetical protein | RT97_19445 | Not Available | Negative | 4191163 - 4191603 | 15501.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
