Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax paradoxus |
| Strain | strain MEDvA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | mine spoil; soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1135217 bp
Thymine Count
1134728 bp
Guanine Count
2318338 bp
Cytosine Count
2318226 bp
Genome Length
6906509 bp
Protein-coding Genes
6027 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mrec | RT97_19300 | Not Available | Positive | 4161458 - 4162429 | 34232.4 |
| rod shape-determining protein mred | RT97_19305 | Not Available | Positive | 4162426 - 4162947 | 19039.0 |
| penicillin-binding protein | RT97_19310 | Not Available | Positive | 4163105 - 4165075 | 71639.6 |
| fumarylacetoacetase | RT97_19315 | Not Available | Negative | 4165208 - 4166479 | 45095.4 |
| abc transporter substrate-binding protein | RT97_19320 | Not Available | Negative | 4166592 - 4167566 | 33468.6 |
| homogentisate 1,2-dioxygenase | RT97_19325 | Not Available | Negative | 4167566 - 4168888 | 48389.2 |
| hypothetical protein | RT97_19330 | Not Available | Negative | 4168941 - 4169129 | 6784.91 |
| fad-dependent oxidoreductase | RT97_19335 | Not Available | Negative | 4169131 - 4170768 | 60178.1 |
| beta-lactamase | RT97_19340 | Not Available | Negative | 4170909 - 4171868 | 35152.6 |
| iclr family transcriptional regulator | RT97_19345 | Not Available | Positive | 4172014 - 4172904 | 31435.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
